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Clinical Immunology

Elsevier BV

Preprints posted in the last 90 days, ranked by how well they match Clinical Immunology's content profile, based on 12 papers previously published here. The average preprint has a 0.05% match score for this journal, so anything above that is already an above-average fit.

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Role of sex hormones in CD4+ T-cell mediated rheumatoid arthritis pathology

Jha, R.; Shaw, S. K.; Bhattacharya, G.; Behera, H.; Pattanaik, C.; Sengupta, S.; Barik, P. K.; Parida, J. R.; Padhan, P.; Devadas, S.

2025-12-18 allergy and immunology 10.64898/2025.12.17.25342530
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BackgroundAn adverse female sex-bias exists across many autoimmune disorders, yet its underlying mechanisms, particularly the role of sex hormones, remains poorly understood. Furthermore, the physiological influence of sex hormones in regulating T cell function remains undefined. We examined for the critical role of estrogen and progesterone, in regulating CD4+ T cell responses, specifically with respect to inflammation and their bone erosion potential in RA. MethodsInflammatory markers, circulating antibodies, sex hormone receptors, ER and PR levels were investigated in both RA patients and controls. Further, RA CD4+ T cells were stimulated in varying concentrations of estradiol and progesterone and assessed for modulation in cytokines, transcription factors, RANKL, and FasL expression. Subsequent ex-vivo studies were performed to examine the role of sex hormones in modulating T cell responses. ResultsRA patients displayed systemic inflammation and high circulating antibodies, with significantly higher expression in synovial fluid. Higher expression of ER and PR was evinced on RA CD4+ T cells. Upon hormone stimulation, two cohorts of patients namely responders and non-responders were observed with respect to modulation in cytokines, transcription factors, RANKL, and FasL expression. Our ex-vivo Th1 and Th17 cells demonstrated that sex hormones play a physiological role in modulating inflammation and have bone erosion potential. ConclusionOur findings demonstrate the pivotal significance of sex hormones in modulating TCR responses, thereby regulating inflammation and bone erosion in RA pathology. Further dissection of TCR signaling pathways with respect to sex hormone stimulation may provide promising targets for therapeutic implications. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=142 SRC="FIGDIR/small/25342530v1_ufig1.gif" ALT="Figure 1"> View larger version (29K): org.highwire.dtl.DTLVardef@b74525org.highwire.dtl.DTLVardef@1cc01aorg.highwire.dtl.DTLVardef@1881e4forg.highwire.dtl.DTLVardef@17de2a8_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Airborne particulate matter enhances with monosodium urate crystals the secretion of IL-1b by human immune cells

Razazan, A.; Merriman, M.; Burden, N.; Reynolds, R.; Joosten, L. A.; Hussain, S.; Merriman, T.

2026-03-02 rheumatology 10.64898/2026.02.26.26347218
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Gout is driven by an interleukin-1{beta}-mediated intense innate immune reaction to monosodium urate (MSU) crystals (MSUc). In cell culture models of inflammatory gout there is a synergistic effect of phagocytosis of MSUc and TLR2 and TLR4 activation by agonists such as free fatty acid and lipopolysaccharide (LPS) in NLRP3-inflammasome activation and IL-1{beta} secretion. A substantial number of gout patients do not report a dietary trigger, and observational studies associate airborne particulate matter with incident gout and flares. Airborne particulate matter contains LPS and airborne-derived particulate matter stimulates IL-1{beta} secretion in cell culture. We hypothesized that air-borne particulate matter could co-stimulate, with MSUc, IL-1{beta} secretion and inflammation. We tested the hypothesis using MSUc with extracted airborne PM4 in human cells (the THP-1 monocyte cell line, primary human monocytes and PBMCs) or carbon black particles with ozone (CB+O3) in a murine foot-pad injection model of gout. There was strong NLRP3-inflammasome-dependent co-stimulation of IL-1{beta} secretion in THP-1 cells with PM4+MSUc and a moderate additive effect in primary human PBMCs. However, there was no added effect on IL-1{beta} secretion of PM4 in isolated primary human monocytes. Inhalation of CB+O3 persistently exacerbated MSUc-induced murine paw inflammation, with an increase of alveolar/lavage macrophages that contained CB+O3 particles and increased lavage expression of IL-1{beta}. In conclusion, airborne-derived PM4 particulate matter enhanced MSUc-induced IL-1{beta} secretion in THP-1 cells and PBMCs. Combined with exacerbation of MSUc-induced inflammation by fine particulate matter in in vivo experiments, these data provide evidence that exposure to fine particulate matter may play a role in the etiology of gout.

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Elevated Levels of IL-9 Fail to Suppress Pathogenic T helper 17 cells in Sjogrens Disease

Voigt, A.; Shen, Y.; Glenton, P.; Rasmussen, A.; Scofield, R.; Grundahl, K.; Lessard, C.; Farris, D.; nguyen, C.

2025-12-22 allergy and immunology 10.64898/2025.12.19.25335657
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Sjogrens disease (SjD) is a chronic autoimmune disorder characterized by inflammation of the exocrine glands, leading to dry mouth and dry eyes. This study investigates the role of interleukin-9 (IL-9) and T helper 9 (Th9) cells in the pathogenesis of SjD. We found that serum IL-9 levels were significantly elevated in SjD patients and correlated with clinical laboratory parameters, including autoantibody production. In a mouse model of SjD, IL-9 and Th9-associated cytokines were also elevated, and Th9 cells were enriched in the salivary glands. Our results suggest that IL-9 is produced by multiple cell types, including macrophages, CD4+ T cells, and NK cells, and that Th9 cells contribute to the development of SjD by promoting inflammation and autoantibody production. We also found that Th9 and Th17 polarization conditions increased Th2 and Th17 cells in SjD mice, indicating a shared epigenetic program that renders T cells permissive to multiple differentiation pathways. Anti-IL-9 treatment had a sex-dependent effect, reducing autoantibody production in male mice but worsening focal glandular infiltration in female mice. Our findings suggest that IL-9 plays a complex role in SjD pathobiology, contributing to both local immunoregulation and systemic autoantibody response. Overall, this study offers new insights into the role of IL-9 and Th9 cells in SjD, highlighting the potential for therapeutic targeting of the IL-9/Th9 axis in the treatment of this disease.

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Type I interferon drives dysfunction of a distinct CD8+ HLA-DRB1+ T cell subset in systemic lupus erythematosus

Long, H.; Carmona, E.; Dozmorov, M. G.; Sawalha, A. H.

2026-01-03 rheumatology 10.64898/2026.01.02.26343348
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ObjectiveSystemic lupus erythematosus (SLE) is characterized by persistent type I interferon (IFN) signaling and adaptive immune dysregulation. We previously identified hypomethylation of HLA-DRB1 and STAT1 in SLE CD8+ T cells, enabling aberrant IFN-driven HLA-DRB1 expression and expansion of a distinct CD8+ T cell subset. This study aimed to comprehensively characterize CD8+ HLA-DRB1+ T cells in lupus. MethodsPeripheral blood CD8+ T cells from SLE patients and healthy controls were analyzed by flow cytometry to assess differentiation and effector functions. Single-cell RNA sequencing and TCR sequencing, with and without IFN- stimulation, were used to assess transcriptional heterogeneity, exhaustion, senescence, and cytotoxicity. ResultsCD8+ HLA-DRB1+ T cells were enriched within effector memory and terminally differentiated CD8+ T cells and were significantly expanded within the effector memory compartment in SLE compared to healthy controls. These cells displayed paradoxical features of cytotoxic activation, proliferative potential, exhaustion, and senescence. Compared to healthy controls, lupus CD8+ HLA-DRB1+ T cells exhibited increased exhaustion, reduced cytotoxicity, and impaired viral defense pathways. IFN- treatment enhanced IFN-{gamma} responses in lupus CD8+ HLA-DRB1+ T cells and exacerbated exhaustion and senescence. Despite upregulation of cytotoxic gene expression, IFN- reduced CD107a surface mobilization, indicating impaired degranulation. Analysis of lupus nephritis datasets revealed that most kidney-infiltrating CD8+ T cells express HLA-DRB1. ConclusionCD8+ HLA-DRB1+ T cells represent a cytotoxic yet dysfunctional effector memory population expanded in SLE. Type I IFN drives this paradoxical state by promoting exhaustion and impaired degranulation, highlighting a potential therapeutic axis in SLE.

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Sustained freedom from disease activity in secondary progressive multiple sclerosis by targeting invariant NKT cells: a phase 2 trial of OCH

Raveney, B. J.; Okamoto, T.; Kimura, A.; Lin, Y.; Araki, M.; Kimura, Y.; Sato, N.; Shimizu, Y.; Nishida, Y.; Yokota, T.; Maikusa, N.; Taketsuna, M.; Okada, Y.; Ishizuka, T.; Nakamura, H.; Miyake, S.; Takahashi, Y.; Sato, W.; Yamamura, T.

2026-02-05 allergy and immunology 10.64898/2026.02.04.26345323
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Multiple sclerosis (MS) therapies primarily rely on lymphocyte depletion or trafficking blockade, carrying risks of systemic immunosuppression; however, such treatments have limited efficacy in secondary progressive multiple sclerosis (SPMS). Thus, drugs that target stage-specific inflammation without broad immunosuppression are an unmet clinical need. In this double-blind, placebo-controlled phase II trial, 30 patients with relapsing MS received weekly oral OCH or placebo for 24 weeks. In the pre-specified SPMS subgroup (n=12), OCH achieved complete relapse prevention (p=0.0003), prolonged relapse-free survival (p=0.0079), no new lesions (0/6), with no evidence of disease activity (NEDA-3) in 5/6 patients. In comparison, for the placebo-treated group, 5/6 patients suffered relapses, 2/6 patients developed new lesions, and no placebo-treated SPMS achieved NEDA-3. Invariant natural killer T (iNKT) cells, a regulatory lymphocyte population that is numerically and functionally impaired in MS, are a potential target for MS therapy. Glycolipid OCH is a selective iNKT cell stimulator, skewing the cytokine environment towards Th2. OCH treatment resulted in increased IL-4-producing Th cells in patient peripheral blood while decreasing pathogenic GM-CSF-producing Th cells. Parallel studies in mouse models of MS (EAE) corroborated this mechanism and further revealed that OCH activated gut iNKT cells. Disease amelioration by OCH depended on IL-4 and its efficacy was further enhanced by depletion of B cells. These data revealed the gut-brain axis mediation of progressive-stage pathology distinct from relapsing-remitting MS. Findings from this bidirectional translational study uncover mechanistic differences between SPMS and other types of MS and highlight divergent roles for B cells and Th cells. Furthermore, OCH exerts its therapeutic benefit via targeting mechanisms that are distinct from currently available drugs; exploiting iNKT cell regulatory potential to reprogram pathogenic T helper responses without lymphocyte depletion. The unique yet effective nature of OCH treatment positions it as an attractive future oral therapy for SPMS. One Sentence SummaryThe iNKT cell activating ligand OCH suppresses disease activity selectively in secondary progressive MS in a phase II clinical trial, revealing stage-specific IL-4-mediated immune cell interactions in MS pathology.

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Single-cell analysis identifies monocyte signatures of disease activity and clinical subtypes in Behcet disease

Carmona, E.; Deniz, R.; Bes, C.; Direskeneli, H.; Gul, A.; Sawalha, A. H.

2025-12-27 rheumatology 10.64898/2025.12.19.25342559
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ObjectivesBehcets disease (BD) is a multisystem inflammatory disorder with diverse phenotypes and incompletely defined immune mechanisms. This study aimed to map immune dysregulation in BD at high resolution, comparing active versus remission states and identifying pathways linked to clinical phenotypes. MethodsWe performed single-cell RNA sequencing on 247,028 peripheral blood mononuclear cells (PBMCs) from 34 BD patients and 12 healthy controls. Transcriptomic profiling, differential gene expression, pathway enrichment analyses, and phenotype-stratified comparisons were used to delineate immune cell alterations associated with disease activity and clinical subtypes. ResultsAll three monocyte subsets were markedly expanded in BD and demonstrated dominant IFN-{gamma}-associated activation, robust heat-shock responses, and enhanced antigen-presentation programs. In active disease, monocytes exhibited pronounced type II interferon signatures, which reversed in remission alongside restoration of regulatory and metabolic pathways. Remission was instead characterized by increased expression of type I interferon-regulated genes, suggesting a potentially protective IFN-I-mediated effect, and by activation of SERPIN-associated programs linked to tissue stabilization. Clinical phenotype stratification revealed distinct monocyte signatures, with vascular BD enriched for heat-shock and stress-response pathways, and ocular BD defined by TNF/NF-{kappa}B-driven inflammation. Patients without organ involvement demonstrated an increased type I interferon gene signature, further supporting a potential protective role for type I interferon responses in BD. ConclusionsThis study provides a high-resolution immune atlas of BD, identifying monocyte-driven dysregulation as a central feature. Our findings map the immune heterogeneity of BD, identify activity- and phenotype-linked monocyte states, and suggest immune pathways suitable for targeted intervention.

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Prognostic Value of IL21, CXCL9 and CD1A in Cervical Cancer

xu, y.; liu, y.; GUO, Z.

2026-01-11 allergy and immunology 10.64898/2026.01.08.26343702
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BackgroundCervical cancer is one of the most common malignant tumors of the female reproductive system. Existing treatments provide limited benefit for patients with advanced, recurrent or metastatic disease, and reliable prognostic markers are lacking. In this study we integrated multi-omic data from The Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) database. Protein-coding genes meeting the criteria of an adjusted P value < 0.05 and |log2 fold-change| > 5 were screened; 693 genes were identified. We further focused on three genes related to the tumor microenvironment--interleukin 21 (IL21), C-X-C motif chemokine ligand 9 (CXCL9) and cluster of differentiation 1A (CD1A)--and performed differential expression analysis, survival analysis, clinical stage analysis and immune infiltration correlation analysis to clarify their prognostic value and potential mechanisms in cervical cancer. Results(1) CXCL9 and CD1A were highly expressed in cervical cancer tissues, and all three genes showed high expression across different pathological stages without stage-dependent differences; (2) high expression of IL21, CXCL9 and CD1A improved patient prognosis and was positively associated with overall survival (OS), disease-specific survival (DSS) and progression-free interval (PFI); (3) expression of IL21, CXCL9 and CD1A was closely correlated with infiltration of multiple immune cells: IL21 correlated with total T cells, helper T cells and B cells, CXCL9 correlated with T cells and activated dendritic cells, and CD1A correlated with immature dendritic cells. ConclusionIL21, CXCL9 and CD1A are potential prognostic biomarkers and key immunomodulatory factors in cervical cancer. This study provides a new direction for immunotherapy and individualized precision treatment of cervical cancer.

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Human RIG-I Antiviral Deficiency Caused by a Dominant-Negative Variant Locked in a Signaling-Inactive State

Solotchi, M.; Jing, H.; Gebauer, E.; Novick, S. J.; Pascal, B. D.; Tung, W.; Hanpude, P.; Zhang, Y.; Alba, C.; Saracino, A.; Laghetti, P.; Shaw, E. R.; Rosen, L. B.; Holland, S. M.; Lisco, A.; Dalgard, C. L.; Marcotrigiano, J.; Griffin, P. R.; Su, H. C.; Patel, S. S.

2026-03-06 allergy and immunology 10.64898/2026.03.02.26347088
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RIG-I is a cytosolic immune receptor that provides the first line of defense by detecting viral RNA and triggering antiviral responses. Its physiological role in humans remains unclear, as no patients with complete RIG-I deficiency have yet been reported. We identified a critically ill COVID-19 patient with severe RIG-I deficiency caused by heterozygous RIG-I G731R, a novel dominant loss-of-function variant. The G731R mutation in helicase motif VI disrupts the arginine finger, impairing the ATPase activity of RIG-I, but not its RNA-binding ability. However, viral RNA binding fails to expose the signaling domains, thereby impairing the IFN-{beta} response of G731R. Instead, G731R competes with wild-type RIG-I, exerting a dominant negative effect. The loss-of-function is caused by bulky-charged substitutions at G731, as alanine or leucine substitution results in an unexpected gain-of-function phenotype. These findings highlight the importance of uncompromised RIG-I function for human antiviral immunity and the pleiotropic effects of single mutations.

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ICI-induced Granulomatous Sialadenitis is Responsive to Prednisone

Kulchar, R. J.; Ogbonnaya-Whittlesey, A.; Beach, M. E.; Khavandgar, Z.; Pelayo, E.; Kleiner, D. E.; Perez, P.; Martin, D.; Burbelo, P.; Chiorini, J. A.; Boutros, P. C.; Wilmont Ball, D.; Boudadi, K.; Cabanillasis, M.; Baer, A. N.; Warner, B. M.

2026-01-26 allergy and immunology 10.64898/2026.01.21.26344113
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Immune checkpoint inhibitors (ICIs) have transformed cancer treatment but commonly cause immune-related adverse events (irAEs), whether administered as monotherapy or in combination with other oncological agents. We present the first reported case of ICI-induced granulomatous sialadenitis in a male patient in his mid-fifties with BRAF-V600E-mutated papillary thyroid carcinoma who received sequential treatment with BRAF/MEK inhibitors followed by pembrolizumab. The patient experienced acute-onset severe xerostomia and salivary hypofunction, prompting ICI cessation and salivary gland biopsy. Integrative analysis using histology, single-cell RNA sequencing, and spatial transcriptomics revealed macrophage- and T-cell-mediated epithelial damage driven by epithelial senescence and Th1-polarized inflammation. Corticosteroid therapy reduced granuloma burden and improved salivary flow rates and tissue architecture; however, extensive fibrosis persisted despite treatment. These findings underscore the critical importance of early irAE recognition and intervention to preserve glandular function and enable continuation of cancer therapy.

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Phenotype-specific associations of mosaic chromosomal alterations in systemic sclerosis

Nishio, Y.; Ishikawa, Y.; Uchiyama, S.; Liu, X.; Takada, S.; Kuroshima, T.; Yoshifuji, h.; Kodera, M.; Akahoshi, M.; Niiro, H.; Motegi, S.-i.; Hasegawa, M.; Asano, Y.; Nakayamada, S.; Tanaka, Y.; Koyanagi, Y. N.; Matsuo, K.; Kawaguchi, Y.; Kuwana, M.; Imoto, I.; Yamaguchi, Y.; Terao, C.

2026-03-03 rheumatology 10.64898/2026.03.02.26347384
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ObjectivesMosaic chromosomal alterations (mCAs) increase with age and are associated with many diseases, including autoimmune diseases. The associations between mCAs and systemic sclerosis (SSc) and its clinical subtypes have not been explored. MethodsWe recruited study subjects from two independent datasets (Set 1: 635 SSc, 4,401 controls; Set 2: 347 SSc, 2,170 controls) and detected mCAs (Loss, LOH, Gain, and mLOX) from their peripheral blood samples. Logistic regression analyses were conducted with covariates in each cohort, and the results were meta-analyzed. We also conducted stratified analyses by age groups, the age at disease onset, clinical phenotypes based on the skin lesions, autoantibody profiles, the presence of complications. ResultsWe observed a trend of increased Loss in SSc, especially in old age (P=0.0063). The association of Loss was strengthened in certain subtypes of SSc, including lcSSc (OR=2.22, P=0.019) and SSc with vascular complications (digital ulcers, pulmonary hypertension, or renal crisis, OR=3.30, P=0.0054). The effect sizes of Loss increased in patients with high cell fractions (CFs). We also observed that mLOX was significantly associated with SSc, lcSSc, and ACA-SSc only for subjects with high CFs. mLOX was significantly associated with lcSSc and ACA-SSc even compared with dcSSc and ATA-SSc, respectively. These associations were consistently observed in each of the two data sets. Finally, we identified majority of the associations of Loss were mainly driven by SSc with late age at onset. ConclusionsLoss and mLOX were significantly and differentially associated with SSc and its subtypes, underscoring potential phenotype-specific contributions of mCAs. WHAT IS ALREADY KNOWN ON THIS TOPICO_LISystemic sclerosis (SSc) is a heterogeneous disease, with its phenotypes and disease outcomes varying among patients. C_LIO_LIAge-related mosaic chromosomal alterations (mCAs) in blood and subsequent clonal haematopoiesis are associated with various adverse health outcomes. C_LIO_LImCAs have also been linked to several immune-mediated diseases, such as LORA, and hence may influence immune cells and their functions. C_LI WHAT THIS STUDY ADDSO_LIAutosomal copy-number loss (Loss) is increased in SSc in aged subjects. C_LIO_LILoss was associated with lcSSc, ACA-SSc. ILD-SSc, and VC-SSc in a dose-dependent manner of cell fraction. C_LIO_LImLOX was associated with SSc and its subtypes only in patients with high cell fraction. C_LIO_LILate-onset SSc and its subtypes show stronger associations with Loss with higher effect sizes compared to non-late onset SSc. C_LI HOW THIS STUDY MIGHT AFFECT RESEARCH, PRACTICE OR POLICYO_LIOur study facilitates further research to recapitulate the current findings in independent cohorts as well as in different ancestries. C_LIO_LIIncorporating profiles of Loss and mLOX in blood into conventional clinical information may enable a better stratification of SSc patients and the development of a better management strategy. C_LIO_LIFurther experimental approaches, such as whole genome sequences and single-cell C_LI RNA sequences, that investigate the underlying molecular mechanisms of phenotypic heterogeneity of SSc driven by Loss and mLOX are also warranted.

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A novel esophageal tolerogenic dendritic cell subset

Ni, D.; Nanan, R.

2026-01-19 allergy and immunology 10.64898/2026.01.18.26344343
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BackgroundGastroenteric tract requires robust tolerogenic mechanisms to tolerize foreign antigens like foods and microbiota. This is critical to establish the immune homeostasis, which upon disruption, might contribute to a plethora of atopic disorders, including food allergy and eosinophilic esophagitis (EOE). Recently, there was a new subset of tolerizing dendritic cells (tolDCs), PRDM16 tolDC, discovered in the gut of mice and humans, which confers protection against food allergy. Whether an analogous population of it exist in the esophagus is unknown, especially in the context of EOE, another atopic disease associated with dietary antigens. MethodsWe thoroughly analyzed the human esophagus cell atlas single cell RNA-seq dataset and the myeloid DC-VERSE dataset, in an attempt to identify and characterize the esophageal counterpart of the intestinal PRDM16 tolDC. ResultsWe identified the esophageal counterpart of intestinal PRDM16 tolDC as a conventional type II DC subtype expressing PRDM16, termed as cDC2C (PRDM16). We demonstrated the similarities between PRDM16 tolDC and cDC2C (PRDM16) regarding their transcriptomic and functional profiles. Importantly, we found that cDC2C (PRDM16) were expanded during EOE and exhibited an anti-inflammatory phenotype, suggesting their protective role in EOE. Notably, these tolerogenic DCs were not found in other atopic diseases beyond the gastroenteric tract. ConclusionsWe here defined a novel tolerogenic DC population in human esophagus and demonstrated their implications in the pathophysiology of EOE. These findings would provide novel insights towards the tolerogenic mechanisms along the gastroenteric tract and possess translational relevance for EOE diagnosis and interventions.

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Machine learning identifies shared blood transcriptional biomarkers and immune correlates across antiphospholipid syndrome and systemic sclerosis

He, F.; Yang, R.-J.; Liu, J.-C.; Liu, Y.-W.

2026-01-22 allergy and immunology 10.64898/2026.01.20.26344459
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Antiphospholipid syndrome (APS) and systemic sclerosis (SSc) are immune-mediated multisystem autoimmune diseases with distinct clinical phenotypes but overlapping pathogenic themes, including immune dysregulation, chronic inflammation, and endothelial injury. Using peripheral blood transcriptome datasets from the Gene Expression Omnibus (GSE102215: 9 APS/9 controls; GSE231691: 49 SSc/18 controls), we performed differential expression analysis within each cohort (limma; |log2FC|>1, P<0.05) and identified 281 genes dysregulated in the same direction in both diseases (100 upregulated and 181 downregulated). Enrichment analyses highlighted interferon-related and cytokine/inflammatory signaling programs in APS and SSc. To derive a compact diagnostic signature, we combined random forest feature ranking with a single-hidden-layer artificial neural network, prioritizing five shared candidate biomarkers (S100A8, IER5L-AS1, LTK, PRR5-ARHGAP8, and PCDH1). Each gene showed consistent case-control differences in both cohorts (P<0.001) and achieved good discrimination (AUC>0.75), with S100A8 performing most consistently (AUC=0.98 in APS; AUC=0.88 in SSc). CIBERSORT deconvolution indicated a myeloid-skewed blood profile in both diseases, characterized by higher neutrophil and monocyte/macrophage signals; SSc additionally showed stronger inferred CD4+ T cell and NK cell signals. S100A8 expression correlated with inferred neutrophil abundance in both cohorts (APS r=0.62; SSc r=0.58; P<0.05). Finally, miRNA-target prediction and DSigDB drug-signature enrichment generated regulatory and pharmacologic hypotheses, including immune-regulatory miRNAs (e.g., miR-155 and miR-146a) and candidate compounds (celecoxib, tamibarotene, HMN-176, and XMD14-99). Overall, these results nominate shared blood transcriptional markers and immune correlates across APS and SSc for follow-up validation.

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Adenoviral Vectors Overcome Immunosuppression Via Antigen Persistence and Metabolic Reprogramming

Yu, J.

2026-03-06 allergy and immunology 10.64898/2026.03.05.26347734
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Vaccination frequently elicits suboptimal immunogenicity in organ transplant recipients, particularly those on long-term immunosuppressive therapy, highlighting the need for improved understanding of immunosuppression mechanisms and optimized vaccination strategies. This study enrolled a cohort of 132 individuals and observed significantly lower antibody levels in kidney transplant recipients (KTRs) compared to non-transplant controls (non-KTRs). Antibody levels were inversely associated with both the dosage and duration of immunosuppressive therapy. Complementary small animal studies demonstrated that immunosuppressive treatment dosage-dependently and reversibly impaired antibody production, primarily by depleting immune cells, notably B cells. A single shot of adenoviral vector-based vaccines demonstrated enhanced immunogenicity relative to two shots of alum-adjuvanted protein vaccines, inducing potent neutralizing antibodies (NAbs) and a Th1-biased T-cell response even under continuous immunosuppression. The enhanced response was driven by reduced interference from pre-existing antibodies, sustained transgene expression, and the reprogramming of lipid metabolism to activate T and B cells. Our findings advocate for tailored vaccination strategies, positioning adenoviral vectors as a candidate modality for this vulnerable population.

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Expanding the clinical spectrum of autoimmune inflammatory myopathies with prominent B cell aggregates: a case series

ramanathan, b.; Cheng Shen, H.; Hudson, M.; Troyanov, Y.; Landon-Cardinal, O.; Gyger, G.; O'Ferrall, E.; Ellezam, B.; Karamchandani, J.; Del Carmen Crespo, C.; Jean, D.; Gerber, Z.; Labrie, M.; Leclair, V.; Allard-Chamard, H.

2026-03-03 rheumatology 10.64898/2026.03.01.26347357
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Autoimmune inflammatory myopathies (AIM) with prominent B cell aggregates (BCM) on muscle biopsy is an uncommon finding. We aimed to compare the characteristics and clinical course of patients with BCM on muscle biopsy to those without and characterize B cell infiltrates in the muscle of these patients. We performed a retrospective study of subjects with AIM in the Canada Inflammatory Myopathy Study (CIMS) cohort to identify cases with BCM on muscle biopsy, which was defined as [&ge;]30 CD20+ cells/aggregate. AIM cases without BCM that encompassed the broader spectrum of AIM, namely dermatomyositis, overlap myositis and inclusion body myositis were selected as controls. Descriptive statistics were used to compare BCM cases and controls. Cyclic immunofluorescence (Cyc-IF) was performed to characterize inflammatory infiltrates and B cell structures. We included 69 subjects (mean age at diagnosis 51{+/-}16 years, 77% females): 22 BCM, 24 dermatomyositis, 14 overlap myositis, and inclusion body myositis. Most BCM subjects (18/22, 82%) had an associated autoimmune disease: 12 (55%) had systemic sclerosis, 5 (23%) rheumatoid arthritis and one (5%) systemic lupus erythematosus/systemic sclerosis overlap. Extra-muscular features found in BCM patients included arthritis (50%), interstitial lung disease (43%), Raynauds phenomenon (32%), and dermatomyositis rash (27%). Two patients (9%) had facial muscle weakness and one (5%) had positive anti-AChR autoantibodies. In BCM subjects, upper extremities were weaker than lower extremities in 7/21 (33%) of cases. Neck flexor weakness was frequent (17/22, 77%), while neck extensor weakness was uncommon (1/15, 7%). Cyclic immunofluorescence (Cyc-IF) spatial analysis of BCM biopsies displayed many features akin to tertiary lymphoid structures. Findings suggest possible involvement of both the traditional germinal center reaction and the extrafollicular pathway in BCM. In conclusion, in this series of myositis with B cell aggregates reported to date we found clinical similarities (i.e., associated with overlapping autoimmune diseases) and differences (i.e., muscle weakness distribution) with previous reports. The discovery of tertiary lymphoid structures on spatial analysis of muscle biopsies of BCM patients provides novel insight into its pathophysiology and potential therapeutic targets.

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High-dimensional CyTOF profiling reveals distinct maternal and fetal immune landscapes in gestational diabetes mellitus

Ni, D.; Marsh-Wakefield, F.; McGuire, H. M.; Sheu, A.; Chan, X.; Hawke, W.; Kullmann, S.; Sbierski-Kind, J.; Sierro, F.; Lau, S. M.; Nanan, R.

2026-02-18 allergy and immunology 10.64898/2026.02.17.26346459
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AimsGestational diabetes mellitus (GDM) is the most common pregnancy-related medical complication. GDM is linked to aberrant immune responses in both mothers and offsprings, specifically, the subsequent development of inflammatory diseases. Whereas prior research has focused on specific immune cell subsets, a comprehensive overview of the impacts of GDM on maternal and fetal immune landscape is lacking. Here, we aim to comprehensively decipher how GDM modulates various immune cell populations in mothers and offsprings. MethodsA prospective, longitudinal case-control study was carried out. Maternal blood from GDM-affected (GDM, n=18) and non-GDM-affected (Ctrl, n=21) mothers were collected at ante-(36-38 weeks of gestation) and post-partum (6-8 weeks post-partum) timepoints. Cord blood from GDM (n=7) and Ctrl (n=11) pregnancies were collected upon C-section. They were analyzed with the state-of-the-art cytometry by time of flight (CyTOF) with a 40-marker panel. Additionally, a publicly available RNA-seq dataset for cord blood mononuclear cells was re-analyzed to confirm results from CyTOF experiments. ResultsCompared to Ctrl, GDM was associated with more activated maternal T cell subsets ante-partum, including increased CD45RO+ and Ki67+ CD4+ T cell populations, which reverted post-partum. GDM-affected maternal innate lymphoid cell (ILC) also exhibited increased granzyme B production ante-partum. On the other hand, in GDM-impacted cord blood, fetal T and B cells were more activated, displaying less naive and more effector phenotypes, further supported by RNA-seq analyses. ConclusionsOur comprehensive analyses revealed that GDM is linked to profound changes in the immune landscapes of the mothers (ante-/post-partum) and foetuses (at birth), casting novel insights towards GDM pathophysiology. Longitudinal immune profiling might be warranted for early detection and stratification of risk, and development of targeted interventions to prevent inflammatory disorders in GDM mothers and their offspring. Research in contextO_LIWhat is already known about this subject? O_LIThe maternal and intrauterine environments are important contributors to long-term health outcomes of mothers and offsprings. C_LIO_LISome maternal and fetal immunity changes have been observed in gestational diabetes mellitus (GDM)-affected pregnancies. C_LIO_LIGDM is associated with increased risk of later-life metabolic and inflammatory diseases in mothers as well as offsprings. C_LI C_LIO_LIWhat is the key question? O_LIWhat are the longitudinal alterations in maternal and fetal immune landscapes in GDM-affected pregnancies? C_LI C_LIO_LIWhat are the new findings? O_LIHigh-dimensional immune profiling provided the most comprehensive overview of alterations in maternal and fetal immune landscapes associated with GDM. C_LIO_LIGDM is associated with skewing of maternal CD4+ T cell and ILC towards activated phenotypes ante-partum. C_LIO_LIGDM is linked to more activated fetal T and B cell profiles. C_LI C_LIO_LIHow might this impact on clinical practice in the foreseeable future? O_LIUnderstanding the complex alterations in the maternal and fetal immune landscape in GDM-affected pregnancy provides insights into the long-term impacts of GDM on the mother and offspring. C_LI C_LI

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Application of Impulse Oscillometry Combined with Bronchodilator Testing for Asthma Management: A Children's Hospital Experience in Taiwan

Cheng, I.-H.; Lin, H.-E.; Lu, R. T.-C.; Soong, W.-J.; Yong, S.-B.; Lin, C.-H.

2026-01-30 allergy and immunology 10.64898/2026.01.30.26345207
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BackgroundImpulse oscillometry is a noninvasive pulmonary function test performed during quiet breathing and requires minimal patient cooperation. It is useful for detecting small airway disease and provides increased sensitivity for diagnosing asthma in younger children who may have difficulty completing standard spirometry. Bronchodilator testing, a standard assessment of airflow obstruction reversibility, is recommended in patients with suspected asthma who present obstructive airflow patterns. ObjectiveTo evaluate impulse oscillometry parameters before and after bronchodilator administration across different age groups and to examine the relationship between age and airway resistance in patients with clinician-diagnosed asthma. MethodsThis retrospective study included patients with clinician-diagnosed asthma who demonstrated obstructive airflow patterns and a positive bronchodilator response. Participants were grouped by age: younger than 6 years, 6 to 20 years, and older than 20 years. Key impulse oscillometry parameters--airway resistance at 5 Hz, airway resistance at 20 Hz, the difference between these values, and resonance frequency--were collected and compared across groups. A positive bronchodilator response was defined as a reduction in airway resistance of more than 30% in individuals younger than 18 years and more than 40% in adults. ResultsA total of 225 patients (123 males and 102 females) were included, with a median age of 6 years. At baseline, the median airway resistance at 5 Hz was 175.34% of the reference value (95% CI, 171.66-178.62), and airway resistance at 20 Hz was 121.68% (95% CI, 118.73-127.12). The median difference between these values was 52.32% (95% CI, 49.89-57.14), and the median resonance frequency was 5.11 Hz (95% CI, 4.62-5.35). After bronchodilator administration, airway resistance at 5 Hz decreased to 123.56% (95% CI, 119.07-126.77), corresponding to a median reduction of 52.8% (95% CI, 49.48-56.08; P < 0.0001). Age demonstrated a moderate positive correlation with airway resistance at 20 Hz (r = 0.51, P < 0.001). ConclusionsProximal airway resistance increases with age among patients with asthma, suggesting age-related differences in airway inflammation. Impulse oscillometry combined with bronchodilator assessment provides a practical approach for evaluating airflow reversibility and enhances diagnostic accuracy in suspected asthma.

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Elevated Plasma Monounsaturated Fatty Acids and Their Associations with Disease Activity, Adiposity, and Sex in Patients with Rheumatoid Arthritis: A Cross-Sectional Study

Swamy, S. N.; Belury, M. A.; Cole, R. M.; Heitman, K.; Pan, S.; Yang, Z.; Karabukayeva, A.; Mao-Draayer, Y.; Hanaoka, B. Y.

2026-01-30 rheumatology 10.64898/2026.01.27.26344951
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BackgroundRheumatoid arthritis (RA) is a chronic inflammatory disease characterized by metabolic dysregulation, including altered lipid metabolism. While polyunsaturated fatty acids have been studied, the plasma levels, endogenous synthesis, and relevance of monounsaturated fatty acids (MUFAs) in RA remain unclear. This study examined plasma MUFA levels in RA and their associations with disease activity, adiposity, and intake. MethodsIn this cross-sectional study, 59 individuals with rheumatoid arthritis (RA) and 33 non-RA controls frequency-matched on age, sex, and BMI were recruited between 2017 and 2022. Clinical assessments included disease activity (DAS28), body composition, and metabolic parameters. Dietary intake was assessed using a 4-day food journal, and plasma fatty acids were quantified by gas chromatography in 82 participants with available samples. The stearoyl-CoA desaturase-1 (SCD-1) index was used as a proxy for endogenous MUFA synthesis. Associations between MUFAs and clinical variables were evaluated using univariate and multivariable regression (p<0.05). ResultsRA participants had higher waist-to-hip ratio, fat mass, fasting triglycerides, and lower physical activity than controls. Plasma palmitoleic and oleic acids and the SCD-1 index were higher in RA, whereas linoleic and arachidonic acids were lower. Saturated and omega-3 fatty acids were similar. Higher oleic and gondoic acids were independently associated with greater disease activity; oleic acid was linked to central adiposity, and palmitoleic acid was higher in women, suggesting sex- and adiposity-specific regulation. ConclusionsHigher plasma MUFAs in RA are associated with disease activity, adiposity, and sex, highlighting altered MUFA metabolism as a feature of RA and a potential target for metabolic intervention. Key MessagesO_ST_ABSWhat is already known on this topicC_ST_ABSRheumatoid arthritis (RA) involves systemic inflammation and altered lipid metabolism. While polyunsaturated fatty acids have been studied extensively, the plasma levels, endogenous synthesis, and clinical relevance of monounsaturated fatty acids (MUFAs) in RA remain unclear. What this study addsPatients with RA have higher plasma MUFAs, including oleic and palmitoleic acids, and an elevated SCD-1 index, a marker of endogenous MUFA synthesis. Higher MUFAs are associated with disease activity, central adiposity, and sex-specific patterns, independent of dietary intake. How this study might affect research, practice or policyPlasma MUFAs could serve as potential biomarkers of RA disease activity and metabolic dysregulation. These findings suggest that altered MUFA metabolism contributes to inflammatory pathways, highlighting a potential target for future research, nutritional interventions, or therapeutic strategies.

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Probiotics for the Treatment of Pediatric Allergic Rhinitis: A Systematic Review and Network Meta-Analysis

Li, H.; Chen, Z.; Guo, L.; Liu, D.; Li, D.; Jia, X.; Yan, K.

2025-12-18 allergy and immunology 10.64898/2025.12.15.25342032
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ObjectiveThis study aimed to evaluate the efficacy, safety, and optimal strains of probiotics for pediatric allergic rhinitis (AR) using meta-analysis and network meta-analysis. MethodsA systematic search was conducted in databases including PubMed, Web of Science, Cochrane Library, and China National Knowledge Infrastructure up to July 31, 2025, to identify randomized controlled trials (RCTs). Inclusion criteria were pediatric patients with AR, probiotic interventions, control groups receiving placebo or standard treatment, and reported outcomes such as Total Nasal Symptom Score (TNSS), Pediatric Rhinoconjunctivitis Quality of Life Questionnaire (PRQLQ), serum IgE levels, clinical efficacy, or adverse events. Study quality was assessed using the JADAD scale, with meta-analysis and network meta-analysis (NMA) performed via RevMan and R software, calculating standardized mean differences (SMD), relative risks (RR), and surface under the cumulative ranking curve (SUCRA) values. ResultsTwenty-six RCTs were included, involving 3,014 patients (1,565 in the probiotic group and 1,404 in the control group). Meta-analysis showed that probiotics significantly reduced TNSS (SMD = -0.85, 95% CI [-1.25, -0.44], P < 0.05), improved PRQLQ scores (SMD = -3.94, 95% CI [-4.55, -3.33], P < 0.05), enhanced clinical efficacy (RR = 1.16, 95% CI [1.07, 1.25], P < 0.05), and decreased adverse events (RR = 0.22, 95% CI [0.06, 0.82], P < 0.05), but exerted no overall effect on serum IgE (SMD = -0.39, 95% CI [-0.99, 0.09], P = 0.11). Subgroup and NMA analyses indicated that mixed strains performed superiorly across multiple outcomes. ConclusionsProbiotics, particularly mixed strains, are a safe and effective adjunctive therapy for pediatric AR, improving symptoms and quality of life. Large-scale RCTs are required to validate optimal regimens.

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Pan-disease blood protein profiles of rheumatic autoimmune diseases

Kenrick, J.; Preger, C.; Bueno Alvez, M.; Ulloa, A.; Bergstrom, G.; Notarnicola, A.; Horuluoglu, B.; Smed-Sorensen, A.; Farnert, A.; Norrby-Teglund, A.; Gunnarsson, I.; Wahren-Herlenius, M.; Holmqvist, M.; Padyukov, L.; Chemin, K.; Diaz-Gallo, L. M.; Lundberg, I. E.; Svenungsson, E.; Malmstrom, V.; Klareskog, L.; Bergstrom, S.; Uhlen, M.; Nilsson, P.; Edfors, F.; Pin, E.

2026-02-06 rheumatology 10.64898/2026.02.05.26345462
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Systemic autoimmune rheumatic diseases (SARDs) are a heterogeneous group of autoimmune conditions characterized by immune system dysregulation leading to chronic inflammation and tissue damage. The overlapping clinical manifestations make differential diagnosis challenging, highlighting the need for novel biomarkers to facilitate early diagnosis, stratification, and personalized treatment. Five SARDs including idiopathic inflammatory myopathies (n=210), rheumatoid arthritis (n=84), systemic sclerosis (n=100), Sjogren disease (n=99), and systemic lupus erythematosus (n=99), as well as healthy controls (n=400) and controls with acute infectious diseases (n=218) were selected for plasma protein profiling using Olink Explore 1536. Proteins with known association to SARDs as well as novel associations were identified through differential abundance analysis and machine learning. This explorative cross-sectional study demonstrates the importance of a pan-disease approach to biomarker identification within and between the five SARDs. NPX boxplots from this study are available open-access through the Human Protein Atlas, facilitating further plasma-proteome research on autoimmune diseases.

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A highly prevalent lupus risk haplotype increases IRF7-dependent induction of IFN-α, enhancing antiviral defense and exacerbating autoimmunity

Virolainen, S. J.; Creighton, K.; Dashtiahangar, M.; Krishnamurthy, D.; Parks, L.; Forney, C.; Ampadu, B.; Rudrapatna, A. N.; Dunn, K. A.; Parameswaran, S.; Hesse, H. K.; Chen, X.; VonHandorf, A.; Edsall, L. E.; Yin, C.; Lynch, A.; Gittens, O. E.; Diouf, A. A.; Jones, S. H.; Hass, M.; Javier, E.; Donmez, O. A.; Keddari, Y.; Danzinger, O.; Seelamneni, H.; Namjou-Khales, B.; Ainsworth, H. C.; Comeau, M. E.; Marion, M. C.; Glenn, S. B.; Nath, S. K.; Freedman, B. I.; Tsao, B. P.; Kamen, D. L.; Brown, E. E.; Gilkeson, G. S.; Alarcon, G. S.; Reveille, J. D.; James, J. A.; Criswell, L. A.; Vila, L. M

2026-01-22 rheumatology 10.64898/2026.01.21.26344474
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Genome-wide association studies have identified genetic polymorphisms at 11p15 associated with Systemic Lupus Erythematosus (lupus). Statistical fine mapping prioritizes a highly prevalent coding haplotype within the IRF7 gene. Analysis of ancient DNA confirms that this haplotype has persisted at high frequencies in the global population for millennia. The IRF7 risk haplotype is sufficient to increase nuclear localization of IRF7 and transcriptional activity downstream of pattern recognition receptor pathways. This risk haplotype increases IRF7 DNA binding strength and alters IRF7 DNA sequence specificity, resulting in genotype-dependent increases in IFN- production in numerous biological systems, including monocytes and airway epithelial cells. CRISPR engineering of a homologous risk variant in mouse Irf7 results in both enhanced innate control of virus infection and increased autoantibody titers in a model of autoimmunity. Altogether, we establish a persistent and prominent genetic IRF7 haplotype that amplifies IRF7 activity in a manner that has immunological risks and benefits. HIGHLIGHTS[bullet] Genetic analysis using modern and evolutionary datasets identifies a persistent and highly prevalent lupus-associated coding haplotype in IRF7 at 11p15 [bullet]The IRF7 lupus risk haplotype increases IFN- production by monocytes and airway epithelial cells [bullet]The IRF7 lupus risk haplotype increases IRF7 DNA binding strength and alters DNA sequence specificity [bullet]A homologous lupus risk variant in mouse Irf7 enhances control of vesicular stomatitis virus and exacerbates autoantibody production